References

ASTERICS team. 2021. “TCGA Case Study for ASTERICS.” Recherche Data Gouv. 2021. https://doi.org/10.15454/YNMQUY.

Dillies, Marie-Agnès, Andrea Rau, Julie Aubert, Christelle Hennequet-Antier, Marine Jeanmougin, Nicolas Servant, Céline Keime, et al. 2012. “A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.” Briefings in Bioinformatics 14 (6): 671–83. https://doi.org/10.1093/bib/bbs046.

Kothari, Charu, Alisson Clemenceau, Geneviève Ouellette, Kaoutar Ennour-Idrissi, Annick Michaud, René C.-Gaudreault, Caroline Diorio, and Francine Durocher. 2021. “Tbc1d9: An Important Modulator of Tumorigenesis in Breast Cancer.” Cancers 13 (14): 3557. https://doi.org/10.3390/cancers13143557.

Lefort, Gaëlle, Rémi Servien, Hélène Quesnel, Yvon Billon, Laurianne Canario, Nathalie Iannucelli, Cécile Canlet, Alain Paris, Nathalie Vialaneix, and Laurence Liaubet. 2020. “The Maturity in Fetal Pigs Using a Multi-Fluid Metabolomic Approach.” Scientific Report 10: 19912. https://doi.org/10.1038/s41598-020-76709-8.

Lê, Sébastien, Julie Josse, and François Husson. 2008. “FactoMineR: An R Package for Multivariate Analysis.” Journal of Statistical Software 25: 1–18.

Pagès, Jérôme. 2004. “Analyse Factorielle de Données Mixtes.” Revue de Statistique Appliquée 52 (4): 93–111. http://archive.numdam.org/item/RSA_2004__52_4_93_0/.

Robinson, Mark D., Davis J. McCarthy, and Gordon K. Smyth. 2009. “edgeR: A Bioconductor Package for Differential Expression Analysis of Digital Gene Expression Data.” Bioinformatics 26 (1): 139–40. https://doi.org/10.1093/bioinformatics/btp616.

Rohart, Florian, Benoît Gautier, Amrit Singh, and Kim-Anh Lê Cao. 2017. “mixOmics: An R Package for ’Omics Feature Selection and Multiple Data Integration.” PLoS Computational Biology 13 (11): e1005752. http://www.mixOmics.org.

Vialaneix, Nathalie, Élise Maigné, Jérôme Mariette, Madalina Olteanu, Fabrice Rossi, Laura Bendhaïba, and Julien Bolaërt. 2022. SOMbrero: SOM Bound to Realize Euclidean and Relational Outputs.

Villa-Vialaneix, Nathalie. 2017. “Stochastic Self-Organizing Map Variants with the R Package SOMbrero.” In Proceedings of the 12th International Workshop on Self-Organizing Maps and Learning Vector Quantization, Clustering and Data Visualization (WSOM 2017), edited by Madalina Olteanu Jean-Charles Lamirel Marie Cottrell, 1–7. Nancy, France: IEEE.